Out of southern East Asia of the brown rat revealed by large scale genome sequencing.
Identifieur interne : 000670 ( Main/Exploration ); précédent : 000669; suivant : 000671Out of southern East Asia of the brown rat revealed by large scale genome sequencing.
Auteurs : Lin Zeng [République populaire de Chine] ; Chen Ming [République populaire de Chine] ; Yan Li [République populaire de Chine] ; Ling-Yan Su [République populaire de Chine] ; Yan-Hua Su [République populaire de Chine] ; Newton O Otecko [République populaire de Chine] ; Ambroise Dalecky [France] ; Stephen Donnellan [Australie] ; Ken Aplin [États-Unis] ; Xiao-Hui Liu [République populaire de Chine] ; Ying Song [République populaire de Chine] ; Zhang Zhibin [République populaire de Chine] ; Ali Esmailizadeh [Iran] ; Saeed S. Sohrabi [Iran] ; Hojjat Asadollahpour Nanaei [Iran] ; He-Qun Liu [République populaire de Chine] ; Ming-Shan Wang [République populaire de Chine] ; Solimane Ag Atteynine [Mali] ; Gérard Rocamora [Seychelles] ; Fabrice Brescia ; Serge Morand ; David M. Irwin [République populaire de Chine] ; Ming-Sheng Peng [République populaire de Chine] ; Yong-Gang Yao [République populaire de Chine] ; Haipeng Li [République populaire de Chine] ; Dong-Dong Wu [République populaire de Chine] ; Ya-Ping Zhang [République populaire de Chine]Source :
- Molecular biology and evolution [ 1537-1719 ] ; 2017.
Abstract
The geographic origin and migration of the brown rat (Rattus norvegicus) remain subjects of considerable debate. In this study, we sequenced whole genomes of 110 wild brown rats with a diverse world-wide representation. We reveal that brown rats migrated out of southern East Asia, rather than northern Asia as formerly suggested, into the Middle East and then to Europe and Africa, thousands of years ago. Comparison of genomes from different geographical populations reveals that many genes involved in the immune system experienced positive selection in the wild brown rat.
DOI: 10.1093/molbev/msx276
PubMed: 29087519
Affiliations:
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Box, Mahé, Seychelles.</nlm:affiliation><country xml:lang="fr">Seychelles</country><wicri:regionArea>Island Biodiversity & Conservation center, University of Seychelles, P.O. 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650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Yao, Yong Gang" sort="Yao, Yong Gang" uniqKey="Yao Y" first="Yong-Gang" last="Yao">Yong-Gang Yao</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences & Yunnan Province, Kunming Institute of Zoology, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences & Yunnan Province, Kunming Institute of Zoology, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Li, Haipeng" sort="Li, Haipeng" uniqKey="Li H" first="Haipeng" last="Li">Haipeng Li</name><affiliation wicri:level="1"><nlm:affiliation>CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Dong Dong" sort="Wu, Dong Dong" uniqKey="Wu D" first="Dong-Dong" last="Wu">Dong-Dong Wu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:29087519</idno><idno type="pmid">29087519</idno><idno type="doi">10.1093/molbev/msx276</idno><idno type="wicri:Area/PubMed/Corpus">000335</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000335</idno><idno type="wicri:Area/PubMed/Curation">000333</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000333</idno><idno type="wicri:Area/PubMed/Checkpoint">000333</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000333</idno><idno 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Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Ming, Chen" sort="Ming, Chen" uniqKey="Ming C" first="Chen" last="Ming">Chen Ming</name><affiliation wicri:level="1"><nlm:affiliation>CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Su, Ling Yan" sort="Su, Ling Yan" uniqKey="Su L" first="Ling-Yan" last="Su">Ling-Yan Su</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences & Yunnan Province, Kunming Institute of Zoology, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences & Yunnan Province, Kunming Institute of Zoology, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Su, Yan Hua" sort="Su, Yan Hua" uniqKey="Su Y" first="Yan-Hua" last="Su">Yan-Hua Su</name><affiliation wicri:level="1"><nlm:affiliation>College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201</wicri:regionArea><wicri:noRegion>Kunming 650201</wicri:noRegion></affiliation></author><author><name sortKey="O Otecko, Newton" sort="O Otecko, Newton" uniqKey="O Otecko N" first="Newton" last="O Otecko">Newton O Otecko</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Dalecky, Ambroise" sort="Dalecky, Ambroise" uniqKey="Dalecky A" first="Ambroise" last="Dalecky">Ambroise Dalecky</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (Ird), CBGP (UMR INRA/IRD/Cirad/Montpellier SupAgro), Montferrier sur Lez cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement (Ird), CBGP (UMR INRA/IRD/Cirad/Montpellier SupAgro), Montferrier sur Lez cedex</wicri:regionArea><wicri:noRegion>Montferrier sur Lez cedex</wicri:noRegion><wicri:noRegion>Montferrier sur Lez cedex</wicri:noRegion></affiliation></author><author><name sortKey="Donnellan, Stephen" sort="Donnellan, Stephen" uniqKey="Donnellan S" first="Stephen" last="Donnellan">Stephen Donnellan</name><affiliation wicri:level="1"><nlm:affiliation>University of Adelaide and the South Australian Museum, Adelaide 5000, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>University of Adelaide and the South Australian Museum, Adelaide 5000</wicri:regionArea><wicri:noRegion>Adelaide 5000</wicri:noRegion></affiliation></author><author><name sortKey="Aplin, Ken" sort="Aplin, Ken" uniqKey="Aplin K" first="Ken" last="Aplin">Ken Aplin</name><affiliation wicri:level="1"><nlm:affiliation>Division of Mammals, National Museum of Natural History, Smithsonian Institution, Washington D.C., 20013-7012, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Division of Mammals, National Museum of Natural History, Smithsonian Institution, Washington D.C., 20013-7012</wicri:regionArea><wicri:noRegion>20013-7012</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Xiao Hui" sort="Liu, Xiao Hui" uniqKey="Liu X" first="Xiao-Hui" last="Liu">Xiao-Hui Liu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Song, Ying" sort="Song, Ying" uniqKey="Song Y" first="Ying" last="Song">Ying Song</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhibin, Zhang" sort="Zhibin, Zhang" uniqKey="Zhibin Z" first="Zhang" last="Zhibin">Zhang Zhibin</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Integrated Management on Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Integrated Management on Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Esmailizadeh, Ali" sort="Esmailizadeh, Ali" uniqKey="Esmailizadeh A" first="Ali" last="Esmailizadeh">Ali Esmailizadeh</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, PB 76169-133, Iran.</nlm:affiliation><country xml:lang="fr">Iran</country><wicri:regionArea>Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, PB 76169-133</wicri:regionArea><wicri:noRegion>PB 76169-133</wicri:noRegion></affiliation></author><author><name sortKey="Sohrabi, Saeed S" sort="Sohrabi, Saeed S" uniqKey="Sohrabi S" first="Saeed S" last="Sohrabi">Saeed S. Sohrabi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, PB 76169-133, Iran.</nlm:affiliation><country xml:lang="fr">Iran</country><wicri:regionArea>Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, PB 76169-133</wicri:regionArea><wicri:noRegion>PB 76169-133</wicri:noRegion></affiliation></author><author><name sortKey="Nanaei, Hojjat Asadollahpour" sort="Nanaei, Hojjat Asadollahpour" uniqKey="Nanaei H" first="Hojjat Asadollahpour" last="Nanaei">Hojjat Asadollahpour Nanaei</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, PB 76169-133, Iran.</nlm:affiliation><country xml:lang="fr">Iran</country><wicri:regionArea>Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, PB 76169-133</wicri:regionArea><wicri:noRegion>PB 76169-133</wicri:noRegion></affiliation></author><author><name sortKey="Liu, He Qun" sort="Liu, He Qun" uniqKey="Liu H" first="He-Qun" last="Liu">He-Qun Liu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Ming Shan" sort="Wang, Ming Shan" uniqKey="Wang M" first="Ming-Shan" last="Wang">Ming-Shan Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Atteynine, Solimane Ag" sort="Atteynine, Solimane Ag" uniqKey="Atteynine S" first="Solimane Ag" last="Atteynine">Solimane Ag Atteynine</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (Ird), IMBE (UMR AMU/CNRS/IRD/UAPV), BP 2528 Bamako, Mali.</nlm:affiliation><country xml:lang="fr">Mali</country><wicri:regionArea>Institut de Recherche pour le Développement (Ird), IMBE (UMR AMU/CNRS/IRD/UAPV), BP 2528 Bamako</wicri:regionArea><wicri:noRegion>BP 2528 Bamako</wicri:noRegion></affiliation></author><author><name sortKey="Rocamora, Gerard" sort="Rocamora, Gerard" uniqKey="Rocamora G" first="Gérard" last="Rocamora">Gérard Rocamora</name><affiliation wicri:level="1"><nlm:affiliation>Island Biodiversity & Conservation center, University of Seychelles, P.O. Box, Mahé, Seychelles.</nlm:affiliation><country xml:lang="fr">Seychelles</country><wicri:regionArea>Island Biodiversity & Conservation center, University of Seychelles, P.O. Box, Mahé</wicri:regionArea><wicri:noRegion>Mahé</wicri:noRegion></affiliation></author><author><name sortKey="Brescia, Fabrice" sort="Brescia, Fabrice" uniqKey="Brescia F" first="Fabrice" last="Brescia">Fabrice Brescia</name><affiliation><nlm:affiliation>Institut Agronomique néo-Calédonien, Diversité Biologique et Fonctionnelle des Ecosystèmes, Port Laguerre, Paita, New Caledonia.</nlm:affiliation><wicri:noCountry code="subField">New Caledonia</wicri:noCountry></affiliation></author><author><name sortKey="Morand, Serge" sort="Morand, Serge" uniqKey="Morand S" first="Serge" last="Morand">Serge Morand</name><affiliation><nlm:affiliation>CNRS-CIRAD, Centre d'Infectiologie Christophe Mérieux du Laos, Vientiane, Lao PDR.</nlm:affiliation><wicri:noCountry code="subField">Lao PDR</wicri:noCountry></affiliation></author><author><name sortKey="Irwin, David M" sort="Irwin, David M" uniqKey="Irwin D" first="David M" last="Irwin">David M. Irwin</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Peng, Ming Sheng" sort="Peng, Ming Sheng" uniqKey="Peng M" first="Ming-Sheng" last="Peng">Ming-Sheng Peng</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Yao, Yong Gang" sort="Yao, Yong Gang" uniqKey="Yao Y" first="Yong-Gang" last="Yao">Yong-Gang Yao</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences & Yunnan Province, Kunming Institute of Zoology, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences & Yunnan Province, Kunming Institute of Zoology, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Li, Haipeng" sort="Li, Haipeng" uniqKey="Li H" first="Haipeng" last="Li">Haipeng Li</name><affiliation wicri:level="1"><nlm:affiliation>CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Dong Dong" sort="Wu, Dong Dong" uniqKey="Wu D" first="Dong-Dong" last="Wu">Dong-Dong Wu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea><wicri:noRegion>Kunming 650223</wicri:noRegion></affiliation></author></analytic><series><title level="j">Molecular biology and evolution</title><idno type="eISSN">1537-1719</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The geographic origin and migration of the brown rat (Rattus norvegicus) remain subjects of considerable debate. In this study, we sequenced whole genomes of 110 wild brown rats with a diverse world-wide representation. We reveal that brown rats migrated out of southern East Asia, rather than northern Asia as formerly suggested, into the Middle East and then to Europe and Africa, thousands of years ago. Comparison of genomes from different geographical populations reveals that many genes involved in the immune system experienced positive selection in the wild brown rat.</div></front></TEI><affiliations><list><country><li>Australie</li><li>France</li><li>Iran</li><li>Mali</li><li>République populaire de Chine</li><li>Seychelles</li><li>États-Unis</li></country><settlement><li>Pékin</li></settlement></list><tree><noCountry><name sortKey="Brescia, Fabrice" sort="Brescia, Fabrice" uniqKey="Brescia F" first="Fabrice" last="Brescia">Fabrice Brescia</name><name sortKey="Morand, Serge" sort="Morand, Serge" uniqKey="Morand S" first="Serge" last="Morand">Serge Morand</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Zeng, Lin" sort="Zeng, Lin" uniqKey="Zeng L" first="Lin" last="Zeng">Lin Zeng</name></noRegion><name sortKey="Irwin, David M" sort="Irwin, David M" uniqKey="Irwin D" first="David M" last="Irwin">David M. Irwin</name><name sortKey="Li, Haipeng" sort="Li, Haipeng" uniqKey="Li H" first="Haipeng" last="Li">Haipeng Li</name><name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name><name sortKey="Liu, He Qun" sort="Liu, He Qun" uniqKey="Liu H" first="He-Qun" last="Liu">He-Qun Liu</name><name sortKey="Liu, Xiao Hui" sort="Liu, Xiao Hui" uniqKey="Liu X" first="Xiao-Hui" last="Liu">Xiao-Hui Liu</name><name sortKey="Ming, Chen" sort="Ming, Chen" uniqKey="Ming C" first="Chen" last="Ming">Chen Ming</name><name sortKey="O Otecko, Newton" sort="O Otecko, Newton" uniqKey="O Otecko N" first="Newton" last="O Otecko">Newton O Otecko</name><name sortKey="Peng, Ming Sheng" sort="Peng, Ming Sheng" uniqKey="Peng M" first="Ming-Sheng" last="Peng">Ming-Sheng Peng</name><name sortKey="Song, Ying" sort="Song, Ying" uniqKey="Song Y" first="Ying" last="Song">Ying Song</name><name sortKey="Su, Ling Yan" sort="Su, Ling Yan" uniqKey="Su L" first="Ling-Yan" last="Su">Ling-Yan Su</name><name sortKey="Su, Yan Hua" sort="Su, Yan Hua" uniqKey="Su Y" first="Yan-Hua" last="Su">Yan-Hua Su</name><name sortKey="Wang, Ming Shan" sort="Wang, Ming Shan" uniqKey="Wang M" first="Ming-Shan" last="Wang">Ming-Shan Wang</name><name sortKey="Wu, Dong Dong" sort="Wu, Dong Dong" uniqKey="Wu D" first="Dong-Dong" last="Wu">Dong-Dong Wu</name><name sortKey="Yao, Yong Gang" sort="Yao, Yong Gang" uniqKey="Yao Y" first="Yong-Gang" last="Yao">Yong-Gang Yao</name><name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name><name sortKey="Zhibin, Zhang" sort="Zhibin, Zhang" uniqKey="Zhibin Z" first="Zhang" last="Zhibin">Zhang Zhibin</name></country><country name="France"><noRegion><name sortKey="Dalecky, Ambroise" sort="Dalecky, Ambroise" uniqKey="Dalecky A" first="Ambroise" last="Dalecky">Ambroise Dalecky</name></noRegion></country><country name="Australie"><noRegion><name sortKey="Donnellan, Stephen" sort="Donnellan, Stephen" uniqKey="Donnellan S" first="Stephen" last="Donnellan">Stephen Donnellan</name></noRegion></country><country name="États-Unis"><noRegion><name sortKey="Aplin, Ken" sort="Aplin, Ken" uniqKey="Aplin K" first="Ken" last="Aplin">Ken Aplin</name></noRegion></country><country name="Iran"><noRegion><name sortKey="Esmailizadeh, Ali" sort="Esmailizadeh, Ali" uniqKey="Esmailizadeh A" first="Ali" last="Esmailizadeh">Ali Esmailizadeh</name></noRegion><name sortKey="Nanaei, Hojjat Asadollahpour" sort="Nanaei, Hojjat Asadollahpour" uniqKey="Nanaei H" first="Hojjat Asadollahpour" last="Nanaei">Hojjat Asadollahpour Nanaei</name><name sortKey="Sohrabi, Saeed S" sort="Sohrabi, Saeed S" uniqKey="Sohrabi S" first="Saeed S" last="Sohrabi">Saeed S. Sohrabi</name></country><country name="Mali"><noRegion><name sortKey="Atteynine, Solimane Ag" sort="Atteynine, Solimane Ag" uniqKey="Atteynine S" first="Solimane Ag" last="Atteynine">Solimane Ag Atteynine</name></noRegion></country><country name="Seychelles"><noRegion><name sortKey="Rocamora, Gerard" sort="Rocamora, Gerard" uniqKey="Rocamora G" first="Gérard" last="Rocamora">Gérard Rocamora</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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